FISH_Processing
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FISH_Processing
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Index
A
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B
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C
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D
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E
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F
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G
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I
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M
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N
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P
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R
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S
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U
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W
A
apply_filter() (fish_analyses.GaussianFilter method)
B
BigFISH (class in fish_analyses)
C
calculate_masks() (fish_analyses.Cellpose method)
(fish_analyses.CellSegmentation method)
Cellpose (class in fish_analyses)
CellSegmentation (class in fish_analyses)
checking_images() (fish_analyses.MergeChannels method)
ColocalizationDistance (class in fish_analyses)
connect_to_server() (fish_analyses.NASConnection method)
convert_to_int8() (fish_analyses.Utilities method)
copy_files() (fish_analyses.NASConnection method)
create_report() (fish_analyses.ReportPDF method)
D
dataframe_extract_data() (fish_analyses.Utilities method)
DataProcessing (class in fish_analyses)
detect() (fish_analyses.BigFISH method)
download_data_NAS() (fish_analyses.Utilities method)
download_file() (fish_analyses.NASConnection method)
E
extract_spot_classification_from_df() (fish_analyses.ColocalizationDistance method)
extracting_data_for_each_df_in_directory() (fish_analyses.Utilities method)
F
fish_analyses
module
function_get_df_columns_as_array() (fish_analyses.Utilities method)
G
GaussianFilter (class in fish_analyses)
get_dataframe() (fish_analyses.DataProcessing method)
I
Intensity (class in fish_analyses)
M
merge() (fish_analyses.MergeChannels method)
merge_masks() (fish_analyses.Utilities method)
MergeChannels (class in fish_analyses)
Metadata (class in fish_analyses)
module
fish_analyses
N
NASConnection (class in fish_analyses)
P
PipelineFISH (class in fish_analyses)
plot_cell_size_spots() (fish_analyses.Plots method)
plot_images() (fish_analyses.Plots method)
Plots (class in fish_analyses)
R
read() (fish_analyses.ReadImages method)
read_files() (fish_analyses.NASConnection method)
ReadImages (class in fish_analyses)
remove_outliers() (fish_analyses.RemoveExtrema method)
RemoveExtrema (class in fish_analyses)
ReportPDF (class in fish_analyses)
S
separate_masks() (fish_analyses.Utilities method)
SpotDetection (class in fish_analyses)
U
Utilities (class in fish_analyses)
W
write_files_to_NAS() (fish_analyses.NASConnection method)
write_metadata() (fish_analyses.Metadata method)
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